Showing posts with label Literature Review. Show all posts
Showing posts with label Literature Review. Show all posts

Monday, 1 December 2014

Mating Chlamydomonas reinhardtii

I find this paper by Jiang, X. and Stern, D (2009) published in Journal of Visualized Experiments super cool. It's about mating and separation of Chlamy's tetrad. It's laborious, obviously, but it seems to be something fun to pick up for my PhD. Let's see if it's possible... *chuckles*

Briefly, Chlamydomonas usually exist in haploid single cells, formed by the "mating" of two strains of opposite mating type (plus and minus). An explanation of the diagrammatic representation of the Chlamydomonas life cycle shown below is taken from Zhao H et al., Genes Dev. 2001;15:2767-2777 (click on the link for the full paper). Gametes are formed when vegetative mt+ and mt− cells undergo gametogenesis induced by nitrogen deprivation (middle left). When gametes of opposite mating type (or sex) are mixed together, they adhere to each other via mating type specific adhesion molecules (agglutinins) on their flagella to form large collections of agglutinating cells (upper center). Flagellar adhesion induces gamete activation that leads to release of cell walls, erection of mating structures at the apical ends of the gamete cell bodies (upper right), and several other cellular and biochemical changes that prepare the gametes for cell fusion. All of the events associated with gamete activation can be induced in gametes of a single mating type by incubating them in dibutyryl cAMP (Pan and Snell 2000b). The tips of the mating structures fuse to establish cytoplasmic continuity, and soon thereafter the two gametes merge completely to become a zygote (lower right). Zygote formation can be extremely rapid, and within 5–10 min after gametes are mixed together, 70%–90% of the cells fuse. Immediately after cell fusion, the zygote developmental pathway is initiated and at 2–4 h after fusion, the zygotes form large aggregates of tightly adherent cells (lower center) as a consequence of synthesis of zygote-specific extracellular matrix molecules and cell body adhesion molecules. At about the same time, the mt− chloroplast DNA is degraded. After an obligatory several days in the dark and upon return to nutrient-rich medium, meiosis and germination occur, and each zygote forms four progeny, two mt+ and two mt− vegetative cells (lower right). Vegetative cells undergo mitotic divisions until the nitrogen is depleted from their medium and the cycle begins again. Diagram modified and adapted from Figure 1 of Pan and Snell 2000b.

Source: http://genesdev.cshlp.org/content/15/20/2767/F1.large.jpg
Sounds fun. Enjoy watching the almost 10-minute long video. I found it rather exciting! *Thinking cap ON*

Monday, 23 June 2014

Literature Review

In the midst of searching for the light at the end of a dark tunnel, I begin to wonder how to do I wade out of the marshland of "Hows?". I know more reading, and more questioning, might help the process. And I wish for more shortcuts to understand the papers I'm reading as I form that big Q. It seems to me that everybody seems to have a relatively easy time to form the big research Q, minus me. When will I be able to form a proper big Q which is good enough to impress the MA?
Source: http://static2.quoteswave.com/wp-content/uploads/2012/01/The-big-question-is-whether-you.jpg

Everyone has his own method of literature review. Mine may not be the latest method. This is just what I know and most comfortable with. Let's return to MY way of systematic literature search:

  1. I start with the journal which is directly related to my topic of interest.
  2. Chronologically, I chose to start from the latest discoveries - some research paper with direct interests which seems pretty similar to my research group's methods of interest.
  3. For more comprehensive understanding of the topic, I choose the latest review paper.
  4. It is important to take note of the list of references of those papers I am reading.
  5. More reading, and note taking.
This is a method I found published on the student support website of UCLan..
Source: https://www.uclan.ac.uk/students/study/library/literature_search_tips.php

I'd recommend the use of Mendeley desktop to aid the walk in the forest of references. So far I find using a reference manager very helpful and systematic. Others might have different recommendations.